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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … as part of the Marine Microbiology Initiative. She conducted her postdoctoral training in human microbiome research … Scripps Institution of Oceanography … Vyshenska D, et al. 2023. A standardized quantitative analysis strategy for …
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Uncovering Novel Genomes from Earth’s Microbiomes
… genomes generated from environmental samples around the world, expanding the known diversity of bacteria and archaea … of the microbial communities in the environmental samples without needing to isolate individual organisms, using … Microbiome Data Science group. “What makes this study really stand out from previous efforts is the remarkable …
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Synthesis
… chromosomes for bioenergy, nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic … assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … DNA constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter …
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2021 Progress Report
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers … sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
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David Goodstein
With a background in experimental and computational surface … equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to … PhD in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to understanding … viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly advanced the field by …
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Cataloging the Microbes that Manage the Health of River Systems
… of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might … turn affecting environmental and human health, energy production and agriculture. Understanding the compositions of … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic … Science, Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual …
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Waiting to Respire
… years ago, cyanobacteria acquired the ability to produce their own food and generate oxygen as a byproduct. The … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed …
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Trent Northen
Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … Microbiology 2019 doi.org/10.1038/s41564-019-0449-y … 2023 Fellow of the American Association for the Advancement …
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