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… plants can’t run away, they’ve evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator …

Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome … from Chlamydomonas reinhardtii reveals continuous cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The …

… work? The project was a multi-institutional effort led by then-graduate student Cory Schwartz and his advisor Ian … of  Y. lipolytica ’s genes to be required for growth. By contrast, an initial screen using an unvetted library … be applied to other eukaryotes. … This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and …

… habitat range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, … and evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … the diversity present in 4X switchgrass, we were surprised by the number of 8X individuals that had been collected from …

… the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for …

… to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic … and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project on National …

Participation (CAMP) program, a statewide initiative funded by the National Science Foundation (NSF) that supports … Jess Jarett, a postdoctoral fellow in Tanja Woyke’s Single Cells Group who mentored 2018 intern Akshay Paropkari, …

… eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed … science for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. Schmutz provides scientific project … management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the collaborative …

Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses … genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic …

Genomes from uncultivated bacteria offers clues to ancestral … ability to produce their own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to the development of multicellular organisms. Not all bacterial lineages harnessed …