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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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The Expanding Universe of Methane Metabolisms in Archaea
… Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a … Symposium and for the JGI Annual Meeting closes on March 11, 2019. Novel Yellowstone archaeon belongs to Korarchaeota … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Defining a Pan-Genome for Antarctic Archaea
… The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … microbes have learned to adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic … haloarchaea across East Antarctica. The implications of the current study are important both to understanding genomic …
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DAS Tool for Genome Reconstruction from Metagenomes
… Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to reconstruct more near-complete genomes from soil metagenomes … with the ETOP mission of providing JGI users with the most current technology and expertise in order to address …
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2024 Progress Report
… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … of Missouri said he and his colleagues had identified 1,110 genes involved in lipid metabolism.  “There’s still a … version brought the soybean sequence up to date with current technology.  In addition to supporting work on the …
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Dan Rokhsar
… JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, … analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and …
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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … Center, Sundy Maurice of the University of Oslo, Aaron Robinson of Los Alamos National Laboratory, Rebecca Smith … interests of the JGI’s user community.  Go here to view the current UEC roster. Baxter is a principal investigator at …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the … genome sequence has improved in parallel. For example, the current version of the genome is assembled into sequences of …
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Frederik Schulz
… the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics … and phylogenomics) and machine learning to find novel functions that may impact microbiome structure and biogeochemical …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought invaluable … national level. A crowd of excited attendees consisting of current interns, mentors, alumni, and other staff gathered …
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Taking Stock of the Known and Unknown Microbial Space
… of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the current state of microbial genomic biodiversity. Using … the past three decades, their study assesses what fraction of the microbial diversity we know about, and proposes a …
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