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A preview of how large-scale single cell genomics complements … value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant …

… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …

… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, …

In honor of the JGI's 25th anniversary in 2022, we have revisited a … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … reference genome built off more than a decade of work; as sequencing technologies advanced, assembly and annotation of …

… on computational and experimental approaches to study genome regulation in human and other vertebrate genomes. … analysis and develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other functional … board member for Scientific Reports … Education … Selected Publications … Awards and Service …

New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling …