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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … manage to miss them; maybe it’s due to the way we currently isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in …
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DAP-seq Drives Robust Mapping of Gene Regulation
… advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … pathways control specific cell types. “A lot of these technologies were designed for samples from humans or mice,” … DAP-seq’s broad applicability extends beyond plants. Currently, this technology is available to JGI users for …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and … surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … applying the same experiment to a new environment. She is currently working on her thesis to characterize the …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … existing methodologies developed for natural languages to study genomes,” Wang explained.  And since microbial genomes …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to identify the … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 …
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JGI Workshops at PAG
… Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … BER Plant Genomic Science In this workshop, we will present current and ongoing developments at the JGI and KBase toward … hear from researchers who are applying genomic sequence information to BER funded activities of plant systems. We will …
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Multiple Maize Reference Genomes Impact the Identification of Variants by Genome‐Wide Association Study in a Diverse Inbred Panel
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities
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Transcription Factor Family-Based Reconstruction of Singleton Regulons and Study of the Crp/Fnr, ArsR, and GntR Families in Desulfovibrionales Genomes
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Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean
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Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat
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