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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … This work was supported by the Australian Research Council … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … continued. “These [newly discovered cells] have very simple pathways. There are different ways to make methane, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not … The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with …
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VEGA Symposium
…   Register here  Registration fees:  Early Bird rates available now General & Berkeley Lab … campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … VEGA 26 will take place at the UC Berkeley MLK Building, in the …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms …   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … structures work in green algae. The genome is remarkably simple with only 7,500 genes, compared to 17,000 in the …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training Wellcome Trust Sanger …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … have been filtered out as noise using more traditional methods. Thus far 25 terabases of metagenome data have been …
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The Busy World of Deep Sea Eruptions
… The ocean depths are vast and dark. But there are hotspots on the ocean floor — …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in … a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … in Mono County, California, scientists have used sequencing methods for the first time to comprehensively characterize …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between … The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … to vastly reduce labor and improve results. Applying this method to the study of a particular fungi, researchers …
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