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Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium
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Reversal of carbapenem-resistance in Shewanella algae by CRISPR/Cas9 genome editing
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JGI@25: Roots of a Mutualist Relationship
… challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal … more multidisciplinary teams. The work also paved the way for a longstanding collaboration between researchers at the … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … virus sequences vary widely. In a previous effort, an international consortium recommended specific … contiguous sequences (contigs) of proviruses flanked on one or both sides by genes from the host organism. With the …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to rapidly growing the economy of … she has continued to contribute across JGI plant genomes. She has appeared on the annual Highly Cited …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers can … JGI users and collaborators gathered for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into …
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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … only for viruses and other microbes , but for scientists. One emerging industry application of DGRs is to use them to …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Annotated Genome Sequence of the High-Biomass-Producing Yellow-Green Alga Tribonema minus
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