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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated … for more details and registration information. Sign up for our newsletter , the JGI Primer, to stay informed … The JGI …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced mass spectrometry …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … DSMZ overall, resulting not only in a valuable sequence resource to complement DSMZ’s vast strain resource, but also …
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Gene Expression: From On-Off Switch to Dial
… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library approach to … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. …
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Gut Fungi: Unexpected Source of Novel Chemicals
… expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of … can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness it, scientists long held that these fungi don’t have the energy …
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … team. The work was a joint effort led by scientists at the  Center for Advanced Bioenergy and … to novel traits.  M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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IMG/M: integrated genome and metagenome comparative data analysis system
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IMG/M: the integrated metagenome data management and comparative analysis system
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
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Sequencing Technologies
… sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has allowed the JGI to increase sequencing output while significantly … hand with the Project Management Office to help ensure the JGI’s genomic capabilities are ready and applicable to …
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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