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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of a microbial community out in its natural environment, scientists have shown at least two microorganisms from …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … and first author of the article. The research team included scientists at the University of California (UC), Berkeley, …
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … team. The work was a joint effort led by scientists at the Center for Advanced Bioenergy and … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … of its kind, with an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 … They play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel …
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Soil virus offers insight into maintaining microorganisms
… identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have … of crystalized samples cloned and synthesized by the JGI, scientists have begun the complex process of uncovering the … second only to cellulose.  Chitin is also a common food source for microbes living within soil. So, the chitosanase …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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A Natural Mechanism Can Turbocharge Viral Evolution
… allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus … been clear. Now, to answer these questions, a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at …
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