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JGI Advisory Committee
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Genome Sequence of Amycolatopsis sp. Strain ATCC 39116, a Plant Biomass-Degrading Actinomycete
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Enlarging Windows into Understanding Gene Functions
… of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … Unique Capability DAP-seq allows researchers to identify all the sites where transcription factors bind quickly … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as …
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DAP-seq Drives Robust Mapping of Gene Regulation
… scale of data enabled by these approaches creates a vast resource offering researchers the ability to chart regulatory … Advancing gene regulation mapping Previous methods to identify where transcription factors (TFs) — the proteins that … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — aligned with DOE missions and from PIs who have …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto Nuevo is, historically, a fishing … UC Merced graduate students who participated in the Summer 2015 research experience at the JGI as part of an education …
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Atif Shahab
… of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines … and enables efficient analysis and reporting of sequencing projects and their status. Mr. Shahab has extensive … developing solutions for large-scale sequencing projects and data analysis pipelines.  …
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Katherine Louie
… manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics … to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within complex communities, and … genomic data (MAGI) for functional annotation and identifying unknown compounds (Pactolus). …
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Informatics Advisory Committee
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JGI@25: The Little Alga That Could
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … in 2007 the full genome was sequenced and published in the journal Science . At the time, the project was co-led by … new Chlamydomonas genome-related Community Science Program projects of all kinds,” noted Igor Grigoriev, head of the …
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A Natural Mechanism Can Turbocharge Viral Evolution
… under contract no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing … by the National Science Foundation’s XSEDE computing resource (award DEB170007), and through a Challenge Grant from … DE-AC02-05CH11231 through the Community Science Program (CSP), the G. Unger Vetlesen and Ambrose Monell Foundations, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies … we also hoped to use this unique opportunity to quantify how transitions to higher ploidy could be generating …
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