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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers … bioeconomy. Researchers and farmers could improve future sugarcane varieties so that they can adapt to future environmental conditions. Additionally, insights from …
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I-Min (Amy) Chen
… the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen … IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, taxonomic, and … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more … results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … these scientists (now at Stanford University) collaborated with the JGI. Working together, they found most bacterial …
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Gut Fungi: Unexpected Source of Novel Chemicals
… . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this … in their hunt for anaerobic fungi. By growing extracts without oxygen in ruminant fluid — which smells terrible … The authors acknowledge support from the Center for Scientific Computing from the CNSI, MRL: an NSF MRSEC …
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Integrating Experimentation with Data
Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle … more details and registration information. Sign up for our newsletter , the JGI Primer, to stay informed … The JGI and … U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research …
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UC Merced Interns Reflect on Their JGI Summer Projects
… this past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to … as well as build their network in the field of genomics and scientific research. The topics students worked on ranged … on a career in genomics, and to help foster a diverse future workforce in science. Since the program’s inception, …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida … was happy to offer advice but declined to offer actual scientific help,” said Jonathan Benskin, who teaches the … generation of scientists that will help shape all of our futures.” Proposing a Research Experience Benskin wanted to …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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2024 Progress Report
… processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … 11% of the five-year milestones. … Highlights arising from scientific collaborations with our users over the last year … accomplishments of the last three years but to discuss the future activities of the JGI. Whilst we await the guidance …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern … gene transfers from bacteria have all armed the plant with an array of defense mechanisms. The Impact There are …
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A Grass Model to Help Improve Giant Miscanthus
… into the dynamics of gene expression as it grows back vigorously year after year (perenniality). The Impact Among … Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will …
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Nikos Kyrpides
Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters … Lawrence Berkeley National Laboratory Outstanding Scientific Achievement Award (2022) ASM’s USFCC/J. Roger …
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