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User Support
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … completed by the JGI. It has since been cited more than 5,400 times, including a number of projects that point to …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in … 2,074 genomes of large and giant viruses. More than 50,000 copies of the MCP were identified in the metagenomic …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … that combed datasets from around the world, finding over 125,000 partial and complete viral genomes. That study …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and … long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses the …
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DOE JGI Interns Share Their Summer Experiences
… briefly about their time at the JGI at http://bit.ly/JGI15summerinternsvids . Click here to check out photos of the …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint …
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Progress Reports: 2002–2020
Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY19 Progress Report … FY18 Progress … Report … FY17 Progress Report … FY16 Progress Report … FY15 Progress Report … FY14 Progress Report … FY13 Progress … … FY07 Progress Report … FY06 Progress Report … FY02–FY05 Progress Reports …
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A Collaboration to Improve Plant Genome Annotations Across Species
Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is …
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Jeremy Schmutz
… and co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement … al. 2018. The genomic landscape of molecular responses to natural drought stress in Panicum hallii . Nature …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and … the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he … al (2021) Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. …
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