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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
Learn more
Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … known, throws open the doors to characterizing how DGRs work at the molecular level. Scientists might then harness …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a … that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … more efficiently than one strain could on its own.  In work published in  Synthetic Biology , the team used CRAGE …
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … efforts, but also how data integration and sharing could work across platforms. …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes … together with their unicellular hosts,” Schulz added. The work also used resources of the  National Energy Research …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … Opportunity Program in 2013, a team of researchers has been working on improving methods for isolating and …
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The Power of One, Amplified
… a single low diversity hot spring sediment sample. Their work showed that single cell genomics can add significant … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Better Genome Editing for Bioenergy
… problem: at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … with first author Amundson in the journal Microbiome . The work builds off a proposal approved through a collaborative …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field … these differences and provide a consistent policy framework for JGI customers, the JGI and NCBI have initiated … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Open Frameworks Training the Next Generation of Scientists
… Pathogens , a team of faculty and researchers describe a workforce development program for higher education that … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE … Systems Biology Knowledgebase). Myco-Ed is supported by the JGI Director’s Science Program award #509937. SB was …
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