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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … thought-provoking flash talks, and instructive workshops. Researchers from academia, government, and industry, are … national scientific user facilities dedicated to advancing research in bioenergy and environmental science. They …
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Outreach Stories
Interested in reading more JGI intern and mentor success stories? Read more below. …
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Cultivating Symbiotic Antarctic Microbes
… are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and ‘omics … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … not free-living archaea but rather symbionts. Cavicchioli’s graduate student, Joshua Hamm, successfully cultured two …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … where he has engaged in collaborative, interdisciplinary research focused around developing foundational knowledge of …
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Trent Northen
Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy Institute … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic …
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Jeremy Schmutz
For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … Nature 4637278: 178-183. … Thomson Reuters Highly Cited Researcher/The World’s Most Influential Scientific Minds … (Plant & Animal Science) Clarivate Analytics Highly Cited Researcher: Plant and Animal Science 2018- 2012 Cotton …
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral … Libusha Kelly , Albert Einstein College of Medicine JGI Organizers Simon Roux, Jonelle Basso, Maureen Berg, …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where … host’s susceptibility to pathogens. Dr. Vogel’s current research is focused on developing plant functional genomic …
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I-Min (Amy) Chen
I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … v.7.0: content updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, …
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Dan Rokhsar
… over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the … a Professor of Genetics, Genomics and Development after his research interests shifted from condensed matter physics to … biology, genomics and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, …
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Len Pennacchio
… … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA Synthesis, and Metabolomics) as well as Research & Development in all of these areas. Additional …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … — to support scientists around the world. Most of those researchers send their samples in from afar, without ever … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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