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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now available and  described … change. “With this dataset I can see where every microbe is found, and how abundant it is. That’s very useful for my …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and … genomic technologies and to understand genome function in bacteria. … BS in Biochemistry and Biological Chemistry, Nottingham …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … Liu Project:  Promoter Characterization of the Bacillota Bacterial Phylum Saray Maeda Mentors: Jonelle Basso, Heejung … Terasaki Mentor: Yumary Vasquez Project:  AI Agent for Giant Virus Research Mohammad Abdulqader Mentors: Andrei …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … been identified as the most abundant in the world’s oceans, found in a wide range of morphologies and ecologies. … interested in better characterizing the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green … In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil spill led …
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … with a member of his lab, Abigayle Simpson. They found that although 20 years of SIP experiments have … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of defense … that was able to shed some light on the mystery. They found over seven million repetitive elements that account …
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