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JGI@25: Cow Rumen and the Early Days of Metagenomics
… data obtained from environmental samples — to identify over 27,000 microbial genes. These genes were identified …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is … User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, … in Sacramento-San Joaquin Delta, California” December 14 8:05am Convention Center, Rm 231-232: Josue Rodriguez-Ramos, …
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Training the Next Generation of Talent
… of California, Merced to start orientation as a first-year graduate student in the Quantitative Systems Biology … I’ll take that knowledge back with me.” Now a second-year evolutionary biology student in David Ardell’s lab, he … that’s going to be generated at academic level in a few years as it’s getting closer to producing trillion base data …
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JGIota: Looking Back at Methane-Making Microbes
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JGI@25: Fueling Investigation into Methane-Making Microbes
… the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that started six years earlier, researchers put together what they called the … a variety of methane-mitigation goals. One aim is identifying chemical compounds that could inhibit microbial …
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VEGA Symposium
… and Applications (VEGA) symposium will take place November 18-19, 2026 on the UC Berkeley campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral … MLK Building, in the East Pauley Ballroom, November 18–19, 2026. The poster session will be held on Nov. 18 in …
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Marine Microbe Contains Multitudes
… cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected … namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial species. All SAR324 have very closely related … was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore Foundation …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… diatoms and kelp. Dubbed Phytopthora ramorum (pronounced: Fy-TOFF-thor-uh ra-MOR-um) the genus in Latin translates to … disease and how to control them. Despite advances in the years since this landmark publication, SOD continued to … spread of a plant disease, according to Garbelotto. In one year alone, 500 people participated in SOD Blitz activity, …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and … in flowering plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, José F. … DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis … and Reusability) for data reuse.  In the last year, JGI’s user community has helped propel multiple … of his lab, Abigayle Simpson. They found that although 20 years of SIP experiments have generated plenty of insights, …
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Access to Rock Star Scientists
… Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super …
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Improving the Cacao Genome and Phytozome
… (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate brands … why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is …
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