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Marine Microbe Contains Multitudes
… with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … tend to stay localized at different depths. But SAR324 can be found throughout the water column, from the warm, … cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … disease and how to control them. Despite advances in the years since this landmark publication, SOD continued to … spread of a plant disease, according to Garbelotto. In one year alone, 500 people participated in SOD Blitz activity, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope … to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis … and Reusability) for data reuse.  In the last year, JGI’s user community has helped propel multiple …
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A Plant Root Atlas for Tracking Developmental Trajectories
… research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out … Five Berkeley Lab Scientists Receive Prestigious Five-Year Research Grant …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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Improving the Cacao Genome and Phytozome
… Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate … why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … it leads to reduced harvest yields. Over thousands of years, farmers have selected for cereal plants without this …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation could look like. In one article, … studying virus-host dynamics in nature. In the last few years, mapping the planet’s viral diversity has advanced …
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Defining a Pan-Genome for Antarctic Archaea
… was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project … of the US Department of Energy under contract no. DE-AC02-05CH11231. S.E. was supported by the EMBO Long-Term Fellowship …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… Genomics call for proposals . The proposal call is open year-round, but proposals submitted by July 30 will be … [DNA Synthesis Science Head] Yasuo [Yoshikuni] gave back in 2016.” Alper’s first approved JGI proposal came through the … development and its applications. “I moved to UC Davis in 2014,” recalled Philipp Zerbe of the University of …
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A Sorghum Pangenome Opens More Doors to Discovery
… to build this pangenome, including a reassembly of the BTx623 reference genome. This cultivar has been the reference since 2009. In the United States, BTx623 is often used as a parent … program. By producing more genomes of higher quality each year, the JGI provides more insight into plant variation for …
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