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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that … diversity has no genomic representation in the public databases. In a similar analysis for Archaea , the team …
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The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database
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efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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metagRoot: a comprehensive database of protein families associated with plant root microbiomes
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The Case for Conservation
… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each … males; plant breeding experiments could be completed faster without extra crosses. The work wraps more than a … The work conducted by the U.S. Department of Energy Joint Genome Institute was supported by the Office of Science of …
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Nick Everson
… and logistics activities.  He returned to the Joint Genome Institute after serving as the Chief Operating …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … Huntemann, Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of … sped up the study of giant viruses.  Kyrpides and the JGI’s IMG/M Data Portal were instrumental to  a study that looked …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model species. The … chromosomes. In a follow-up study , researchers focused on two types of naturally occurring switchgrass, those with 4 …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a … Basepairs — A Vision for Integrative and Collaborative Genome Science , the culmination of an eight-month intensive …
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