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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy (DOE) Joint … As their small genomes can be easily manipulated through genetic engineering, inoviruses are used for several …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … of algae? You now have one place where you can browse the genetic blueprints of these photosynthetic organisms. … MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. Kuo and Grigoriev …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … warmer waters, including the tropics, tend to be dominated by prokaryotes (microorganisms without a defined nucleus). … to this fundamental observation of cold and warm microbial networks, and just how clear and stark the biogeographic …
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Kjiersten Fagnan
… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … winning team at the Supercomputing conference, SC’18, led by researchers at Oak Ridge National Laboratory. Dr. Fagnan … Epidemic: Determining the Epistatic and Pleiotropic Genetic Architectures for Chronic Pain and Opioid Addiction,” …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … of algae? You now have one place where you can browse the genetic blueprints of these photosynthetic organisms. … MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. Kuo and Grigoriev …
Learn more
Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … resources. Q:  Where can I get information for funding by JGI? A: The JGI is not a funding organization. Rather, it … data (secondary metabolomics), how can we map it into these networks? A: We use networks based on the fragmentation …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand microbial communities by looking at protein function within them. The work was led … sequencing allows researchers to study the entire genetic makeup of these communities via whole genome …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, and viruses vastly … not appear to be evenly distributed around the world. One expanded group is of viruses associated with bacteria; until …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship program between … with their mentors and fellow interns. Inspired by the success of the UC Merced internship program, they … industry-level work and coding. Receive mentorship, network and gain connections with lab staff. Increase their …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The … in Marchantia and later plant lineages that independently expanded. Along with NLRs, the diversified peroxidases are …
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