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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're …
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The Soil Blooms Green
… green growth appears on top of farmers’ fields: a microbial community that might be quietly improving the soil. Penn State researchers Mary Ann Bruns and Terry Bell …
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Work With the JGI! Tips for a Winning CSP Proposal
The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — … stage, anywhere in the world, for free. We accept new projects related to energy and the environment several times …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
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Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our … evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. … it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or water. Later, their …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, … flow cytometry protocols for targeted recovery of specific microbes. …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees … energy generation and environmental characterization and cleanup. The JGI provides integrated high-throughput …
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Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer
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Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
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