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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … to build and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI … is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the Society …
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Ancient Algae Reveal Secrets of Plant Evolution
… them to adapt to life on land. Learning that these genetic tools existed in close algal relatives  to terrestrial … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … genomes sequences are available on the JGI’s  PhycoCosm portal. …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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JGI on the 2021 Highly Cited Researchers List
… multi-institutional research team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … two JGI Engagement Webinars promoting the JGI fungal data portal MycoCosm and the algal portal PhycoCosm. …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … the study of giant viruses.  Kyrpides and the JGI’s IMG/M Data Portal were instrumental to  a study that looked into how … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Accelerating Metagenomics Discoveries with Deep Learning
… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … with resequencing of 1,984 cultivars and landraces, these data capture the diversity of this crop across geographic … for future analysis and discovery. “We're building the data sets that are needed to build the algorithms of the …
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Better Genome Editing for Bioenergy
… included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … a team of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s … a pool of sgRNA sequences: six for every gene in the genome. The JGI  DNA Synthesis Science team synthesized …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This means it contains more than two copies of the genome , which can have pronounced ecological and … by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint …
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