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David Goodstein
… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to … expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, he began … responsible for genome annotation, comparative analysis and data distribution for the JGI's direct collaborators and the …
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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence …
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Tour the IGB
… zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of … the science depicted, click here . <span data-mce-type="bookmark" style="display: inline-block; …
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Natural Prodcast
… to medicine, the environment, and human health. As the JGI acts on its goals in — and builds out its capabilities … field about current and future developments, and how the JGI can be part of that space.   …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … a STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a …
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Marine Microbe Contains Multitudes
… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Oceanography: Research and Education. … SAR324 on IMG/M Data portal … BBTools is a suite of fast, multithreaded …
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A Step Toward Controlling Soybean Rust
… to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … The U.S. … . … Phakopsora pachyrhizi on MycoCosm Data Portal …
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Making a Lichen Together
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and … variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for … No. 1011101 to E.S. and J.M.L. … Fungus Genome on MycoCosm data portal … Alga Genome on PhycoCosm data portal … …
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Additional Outreach Efforts
Interested in reading more JGI intern and mentor success stories? Read more below. …
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Accelerating Metagenomics Discoveries with Deep Learning
… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have …
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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … . … Morel Mushrooms on MycoCosm Data Portal …
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