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DAP-seq Drives Robust Mapping of Gene Regulation
… gene expression maps. Together, the scale of data enabled by these approaches creates a vast resource offering … bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British … patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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Abscisic acid supports colonization of Eucalyptus grandis roots by the mutualistic ectomycorrhizal fungus Pisolithus microcarpus
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Novel hot spring Thermoproteota support vertical inheritance of ammonia oxidation and carbon fixation in Nitrososphaeria
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The Expanding Universe of Methane Metabolisms in Archaea
… Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… of the E. grandis reference genome, an international effort by a team that included researchers at the DOE Joint Genome Institute, a DOE Office of Science User … to TPS genes from other plants. Researchers reported 102 total putative functional TPS genes in C. citriodora, …
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You Can Move, But You Can’t Hide
… and their genetic sequences. The software was created by researchers under the direction of Microbiome Data … Group Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … Data Collaborative ( https://ror.org/05cwx3318 ) is supported by the Genomic Science Program in the U.S. …
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Kjiersten Fagnan
… Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the … team at the Supercomputing conference, SC’18, led by researchers at Oak Ridge National Laboratory. Dr. Fagnan … biology and bioinformatics approaches in support of meeting DOE mission critical programmatic goals. …
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Tracing the Evolution of Shiitake Mushrooms
… a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and … Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … FEDER funds) to F.J.R.-D., S.C., and A.T.M., grant PID2019-103901GB-I00 of the Spanish Ministry of Science and …
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Picking Up Threads of Cotton Genomics
… out of the green pods in every direction. There are 100 million families around the world whose livelihoods … field, growers can easily distinguish the cotton species by traits such as flower color, plant height, or fiber … added. “We must be careful who we ask to take on these projects due to their difficulty and complexity, but we have …
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A Natural Mechanism Can Turbocharge Viral Evolution
… DGR could mutate the virus’ tail fiber proteins, and thereby allow them to embrace different cells. Since that … a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … R.C. was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program …
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Cultivating Symbiotic Antarctic Microbes
… have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of archaeal … along with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … work was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program …
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