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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the … at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling … decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. …
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Genome sequence of the palaeopolyploid soybean
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Honey Bee Gut Microbiota Divvy Up Dinner
… absorbable solution of sugars. But pollen contains plant cell walls, which have complex, branching chains of … is a division of labor by these bacterial groups. But why the strain variability? The authors think the reason may … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … who encounter an elephant for the first time. Based on the single body part each blind man touches – a tusk, the ear, …
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) … ( 2017 ), have identified many more genes than found in the single reference genome, including traits useful for …
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Webinars on Offerings & Capabilities
Below are a list of webinars that can help you through the submission process … Research shows researchers how to tap into the capabilities of the Advanced Photon Source when applying to the FICUS …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight more that we are …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … land. Key gene groups involved in stress tolerance and multicellularity enabled plants to develop complex structures and … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25: From Life at the Extremes to Editing Genomes
… of miniature CRISPR-associated proteins that can target single-stranded DNA. Such proteins have been adapted for … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … scoutRNA Is Required for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: …
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Sequencing crop genomes: approaches and applications
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Selection to sequence: opportunities in fungal genomics
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Frameshift detection in prokaryotic genomic sequences.
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