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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science … with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … we head there for a sense of what this supercomputing looks like. …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing … is a division of labor by these bacterial groups. But why the strain variability? The authors think the reason may … be that polysaccharide-degrading enzymes are secreted. It’s like giving everyone a fork — all strains can potentially …
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
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Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … rumen microbes are awesome and this is just another example why.” …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address … seedlings grown in a controlled environment chamber, so the fungus could colonize the plants’ roots. Then, comparing … targeting biofuel feedstocks in similar studies. “We would like to look at arbuscular mycorrhizal symbiosis in other …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC … in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … (JGI), a DOE Office of Science User Facility, and others like it, are uncovering the true diversity of the fungal …
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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of researchers. … our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Director of Operations, shares her story of what it was like on the frontlines at the Joint Genome Institute. Hear … Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they …
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