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Understanding Wildfire Recovery, Starting in Soil
… a multi-institutional team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National … DOE Office of Science National User Facilities in a single project. … This work was supported through a USDA NIFA award …
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How Microbes Can Protect Plants in Drier Straits
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David Goodstein
… in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type … across the plant kingdom. Nucleic acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… cost and resource requirements of processing these sturdy materials, rumen microbes and their enzymes are an optimal … to more sustainable energy production.  However, less than 10% of the microbes found in any environment can be grown in … and then extrapolating data obtained from environmental samples — to identify over 27,000 microbial genes. These …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… as well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the … provide colleagues at the Salk Institute with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that …
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Len Pennacchio
… at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University … Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and … a vision for future technical JGI directions for DOE User science. … Complete Publications Genomic Technologies …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He received his Ph.D. from the … vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on … and to understand genome function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … for the accepted proposals, said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize …
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You Can Move, But You Can’t Hide
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory … the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out in its … as through the Facilities Integrating Collaborations for User Science Program (FICUS) with the Environmental …
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Supercharging SIP in the Fungal Hyphosphere
… which means they offer a lot of insights into how plant materials can be broken down for things like biomass and  … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have … to the process. This automation lets researchers study more samples and provides better resolution by splitting the DNA …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … from thousands of ecologically diverse metagenomics samples. The work is supported by NIH Common Fund grant …
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