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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … matching these viral genetic sequences to their hosts is crucial to understanding what these viruses can do. Building … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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Work With the JGI! Tips for a Winning CSP Proposal
… The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and it’s open …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was … the HudsonAlpha Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the …
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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … and multicellularity enabled plants to develop complex structures and adapt to changing environments — ultimately … Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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JGI Announces 2026 New Investigator Portfolio
… A. Estrada-Graf, Nicole M. Fernandez; [Row 2]: Zachary Garvin, Chandan Kumar Gautam, Gareth Gillard, Audrey Goeckner, … a widening circle of researchers whose work aligns with the DOE’s Biological and Environmental Research program … minerals recovery, microbial pathways for high-value bioproducts, and plant–microbe interactions that enhance crop …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & … The invited talks emphasize how the research infrastructure – DNA sequencing, synthesis, metabolomics, data …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein National Research Service … Science, University of Florida NIH Postdoctoral Researcher, UCLA …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … Ocean long ago, this shift to archaea being the main producer doesn’t occur here. Understanding this fundamental … Antarctic Science program (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … features and functions. Making connections between the structures and functions of the genes encoded in the genome … science mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea … regional and global biogeography of haloarchaea and the structure and extent of the Antarctic microbial pan-genome. … Antarctica distinct and unique. In collaboration with the DOE Joint Genome Institute, a DOE Office of Science User …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through … common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural shift in data access. Users were previously limited …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The … genes were synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … sesquiterpenoids, National Science Foundation Plant-Biotic Interactions Program (grant no. 1758976 to E.S. and P.Z.) …
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