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Applying Viral Genomics Expertise to Understanding the Human Virome
… host microbes impact the regulation of global nutrient cycles. The JGI’s latest strategic plan (download a copy  … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol …
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JGI Early Career Researchers Featured in mSystems Special Issue
… article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … While microbes regulate the planet’s biogeochemical cycles, viruses infecting microbes shape global ecological …
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Three Join the JGI User Executive Committee
He’s interested in how microbes influence biogeochemical cycles in soils and sediments and plant-microbial … and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA … a breadth of institutions, research topics and career stages. The election period concluded on January 8, 2024. …
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Training the Next Generation of Talent
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … the world, playing key roles in regulating global nutrient cycles. The information gained from understanding the … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …
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A Natural Mechanism Can Turbocharge Viral Evolution
… sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is …
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The Power of One, Amplified
… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the … Impact Though microbes help regulate the planet’s nutrient cycles and are potentially of use in fields ranging from …
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The More the Merrier: Making the Case for Plant Pan-genomes
… three  Brachypodium  grasses have small genomes, short life cycles and can be easily transformed, traits that make them …
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A Collaboration to Improve Plant Genome Annotations Across Species
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… whose presence or absence can impact the planet’s nutrient cycles. While most organism’s genetic information is encoded … store their genetic information in RNA without a DNA stage. “I would argue RNA viruses globally are even less …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… the JGI’s ability to predict and respond to biogeochemical cycles, which builds on the DOE’s interest in mitigating …
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Doubling Down on Known Protein Families
… (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … of doing a lot of unique things when it comes to energy cycles — turning biomass into things like ethanol or … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire …
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