Results

MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so …
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The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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CRISPR-resolved virus-host interactions in a municipal landfill include non-specific viruses, hyper-targeted viral populations, and interviral conflicts
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH … on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility …
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