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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). … (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from the …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, …
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Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments
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The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings
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Diversity and Distribution of Hydrocarbon-Degrading Genes in the Cold Seeps from the Mediterranean and Caspian Seas
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that …
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Expanding the biocatalytic and oxidative landscape of the old yellow enzyme family
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Tanja Woyke Elected to American Academy of Microbiology
… American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 … AAM Fellows is based on their records of scientific achievement and original contributions that have advanced … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One …
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Trent Northen
… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … research programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has … (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on … it’s been prioritized in breeding efforts, and also because 8X switchgrass is generally thought to harbor less genetic …
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