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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … could help improve crop drought resilience. It’s a superpower even Marvel’s Brock/Venom would envy. …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… in Mexico. While conducting early field studies related to her thesis on cone snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial products.    The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … This work was supported by the Department of Energy (DOE) Office of Science, Biological and …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … plants are diploids with two copies of each chromosome, one inherited from each parent. Some plants, known as …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the … the University of California, Davis. “The work with JGI was one of the first things we actually started doing when … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … look at how this enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published … program and current PhD student, reached this milestone with a recent publication in Molecular Biology and …
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Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide
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