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The Expanding Universe of Methane Metabolisms in Archaea
… today is not only important to understand early life, but also to link the evolution of this metabolism to geochemical data, which in turn can help to understand its impact on climate along earth history.” Marker genes for … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Computationally Classifying Fungal Lifestyles
… in correctly predicting plant pathogens (blue) vs saprobes (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also built a high-quality phylogenetic tree for  …
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Scaling Up Existing Skill Sets
… to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD … know existed before. Seeing the breadth of interesting work being done at the JGI has really motivated me to think …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive … and Environmental Research (BER) program to enable scientific discovery in support of the DOE mission. … with a series of large datasets. One test was to predict traits of more than 400 cultured rumen prokaryotes from the  …
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Metabolomics Program
… discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as … to repeatable, controlled experimental manipulations while being simultaneously imaged and sampled.  Combining … but highly recommend using the workflow in  GNPS2 .   … In support of user science, the JGI Metabolomics …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv … that infect not just crops, animals and humans, but also microbes whose presence or absence can impact the … information fully free and openly available to the broader scientific community.” Uri Gophna from Tel Aviv University, …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The … both when and how eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time estimates for major colonization events. It was …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in Tennessee — the birds are chirping … in machine learning. Despite working alongside his scientific idols, Lawrence recalls feeling very comfortable. …
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Waiting to Respire
… bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria … diverged from the bacterial tree before Cyanobacteria and its contemporaries. Margulisbacteria were named for Lynn … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of … on a competitive, peer-reviewed basis to the worldwide scientific community can advance your research goals. …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… and capabilities to enable great science that will help solve energy and environmental challenges. In 2009, … an uncultured bacterial single cell – a symbiont of the green sharpshooter. In 2012, single cells isolated from the … Bigelow Lab led to the identification of key microbial culprits in carbon fixation in the dark ocean. Combining single …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of … pores, water is moved into the atmosphere basically along its concentration gradient. So, the movement of water … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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