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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … through their diverse genomic capabilities. Summary In a project supported by the JGI Community Science Program, … communities.  Part of the work was done through a summer project in the JGI-UC Merced Internship Program. In 2023, …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that … carbon and nutrient flux, and identify microbes assimilating labeled compounds. During this webinar, EMSL’s Mary … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the principles for open … as well as to the  data portals that the JGI manages, immediately after data processing. The JGI has sought to …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was … wetlands in south Texas,” he explained. “In terms of my project, I wanted to incorporate that CSP, but also look at …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We … advanced genomic capabilities. This year we brought online the latest short-read technology, the Illumina NovaSeq X …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more … its initial release in 2009, the soybean genome sequence immediately spurred further research and additional …
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …
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JGI & KBase at PAG XXVII
… XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology … science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … Program over the past decade in gene regulatory network projects supported by the CSP, and as part of microbiome … the broader community. Eisen has been involved in many JGI projects, both as a CSP PI and as a collaborator. He …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and well-thought-out questions. We are looking for projects that can’t easily be done at a core facility, but …
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