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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since … throughout the planet’s oceans can exert great influence on earth’s carbon and nitrogen cycles. Currently one of the …
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Natural Prodcast Episode 23: Aaron Puri
… natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore the chemistry of … episode , you’ve heard a little about these, and Aaron and JGI are working together to try to understand the enzymology … ecology community to be able to better predict how their microbes are interacting with each other from sequence …
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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When “The Blob” Made It Hotter Under the Water
… predictive models on how climate change may impact marine microbes and by extension, the ocean’s capacity to act as a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … nutrient flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral …
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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … to other methods. The Impact Understanding how individual microbes interact with each other in a community, and … samples. The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in …
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Frederik Schulz
… the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. … and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnology 39, 499-509. …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… to bioremediation efforts for decades. Identifying resident microbes that can help bioremediate toxic substances has led … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … involved in successfully biodegrading PCE.  Through the JGI’s  Community Science Program , they were able to analyze …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
…   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be converted to … The Impact Despite constituting less than 5% of land on Earth, peatlands store approximately one-third of the … and have very little oxygen, which is tough on the type of microbes that break down plant matter. This means plants …
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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Viruses Reprogram Cells into Different Virocells
… infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … project. For this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy …
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