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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first step in the deadly dance … (DP150100244) and the Australian Antarctic Science program (project 4031). The work in the Hallam Lab was performed …
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Salicylic acid activates poplar defense against the biotrophic rust fungus Melampsora larici‐populina via increased biosynthesis of catechin and proanthocyanidins
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in … the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the masters …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, expression and regulation of protein-coding genes. This first …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the … research offshoots in totally different areas, beyond the project’s initial scope. Sequencing and culturing this vast …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been … they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic frameworks spanning … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Adopt-A-Genome
… (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and Leslie Mitchell (Neochromosome) have worked … to replace yeast’s native chromosomes with synthetic versions. This project has turned out to be an international collaboration, …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted … one JGI mentor. Together, they work through a specific project that aligns with each intern’s interests or … year, but we’ve had another successful year. I was so impressed with the work everyone has done.” The 2020 JGI-UC …
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Natural Prodcast Episode 2: The Primer, Part 2
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re … metabolites!  DAN: One of the things that I did want to impress, too, is that secondary metabolism is based on primary … in partnering with us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, …
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