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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less … organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules into a plant’s root … is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … focused on tool development. Specifically, the goal of this work is to develop tools, curated databases, and streamlined …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… for sequences of RNA viruses in large data sets, their work may be akin to finding a single snowflake on a … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … with the JGI began soon after the JGI was established to work on the Human Genome Project in 1997. She was a group … and the JGI. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs) have expanded the …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … Biotechnology. “The goal has been for all this new cotton work, and even the original cotton project was to try to …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He holds joint … National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … was  recently reported in Nature Communications. The work was co-led by Victoria Turzynski in Alexander Probst’s … and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are … is part of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … RIViT-seq expand the known transcriptional regulatory network in bacteria, enabling the discovery of regulatory …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: … Opportunity Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … environmental bacteria from the Tiny Earth collection. The work builds upon a pilot project to sequence antimicrobial-producing strains. Established by Handelsman, Tiny …
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Forest Fungi, Seagrass, and a New View of Symbiosis
Three stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into …
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Extracting the Secrets of Secondary Metabolites
… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … target microbes, users of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … exactly how P. luminescens and its secondary metabolites work could yield new tools for pest control. Secondary …
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