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VEGA Symposium
… of virus-host interactions and phage-based technologies for microbiome manipulation, the VEGA symposium represents a unique opportunity for students and researchers in the viral ecogenomics field … Michael Baym, Harvard Medical School Laurence Ettwiller, New England Biolabs Kathryn Kauffman, University at Buffalo …
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Mining Metagenomes for Cas Proteins
… proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … from infecting viruses and phages. In the event of a new infection, the microbes use the genetic information …
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How Filamentous Fungi Sense Food
… Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has advanced their work on the … is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … lens. This led to the development of a technique called quantitative Stable Isotope Probing, or qSIP —  watch …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta Gribaldo of the Institut … address some of the most pressing challenges of our time. For more information, please visit  …
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How To Use Our Systems
… Each portal lists a contact, or you can reach out via the form on our website.   … Looking for BBTools? Find it here.  …
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Hiroshi Otani
… research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … 2022 Jun 17;13(1):3502. Udwary DW, Otani H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … groups joined the project to contribute to the data for six new species. I must mention that some of the members from … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to access high-quality genomic information using minute quantities of DNA derived from … lineages from a variety of environments. In 2017, the first New Lineages of Life (NeLLi) workshop was held, inviting the …
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Team Science Reveals Important Protein in Poplar
… Knockout experiments showcase potential for engineering bioenergy crops The Science Scientists at … Partly enabled by the JGI  Community Science Program New Investigator program , BNL scientists focused on the protein … II, a U.S. DOE Office of Science User Facility operated for the DOE Office of Science by Brookhaven National …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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