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Special Initiatives & Programs
… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on an existing data set, or the refining of new technology (e.g., …
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MGM Workshop at Fisabio Summer School
… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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MGM Workshop at Fisabio Summer School 2025
… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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Axel Visel
… Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … DNA (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint …
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New and Improved: Eucalyptus Reference is Now Accessible
… having genomic resources to develop molecular breeding tools has been critical. The new improved genome assembly … the bioeconomy. Summary In the past decade, many breeding tools for eucalyptus have relied on the E. grandis reference … Datasets … Datasets …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… call recommended including plans to analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a free, open source data science platform that allows users to explore data and … thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop …
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Yasuo Yoshikuni
… and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe …
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Charting Progress toward Professional Goals
… to projects that will help them build skills and tools, they gain invaluable scientific and technical experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at … hi everyone. My name is Deanna Beatty, and I'm a genomic data scientist here at the JGI, and really happy to be here …
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Training the Next Generation of Talent
… genome research and apply experimental and computation tools to solve research problems. In Visel’s group, Olmstead … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that … of the opportunity. “I’m getting a picture of the amount of data that’s going to be generated at academic level in a few …
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Improving the Cacao Genome and Phytozome
… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … to a high quality modern standard and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now … Theobroma cacao on Phytozome Data Portal …
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Natural Prodcast Episode 16: Marcy Balunas
… massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … figuring out how to filter out noise from the metabolomics data. We’ve done a lot of work learning about how to use … strain to look at.  And then figuring out how to show this data and to do it in a way that makes sense. And I always …
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