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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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Neha Varghese
… analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science … through implementation of advanced analysis pipelines and tools as well as development and implementation of …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … genome and transcriptome data were generated, bioinformatic tools for binning metagenome data involved with mainly …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Sequencing Technologies & Products
… offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling … The JGI provides users access to cutting-edge cell sorting, DNA …
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Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T)
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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