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… microbiome science from largely observational to reproducible mechanistic studies.  This conference is inspired by … (EcoFABs) designed for precise manipulation and reproducible experimentation of microbiome dynamics. Together, we will explore cutting-edge advancements in constructing, modeling, and applying these engineered ecosystems …

Genome Sequencing Center. Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference …

The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … for them. Their concerted efforts help maximize the JGI’s impact in advancing both user science and the DOE …

Lab Director’s Award for Exceptional Achievement 2012 UC Berkeley, Leadership and Development Program Awardee … of cancer cells define their sensitivity to HAMLET-induced death; c-Myc and glycolysis. Oncogene, 30(48), 4765–4779. Google Scholar. … Education … Awards and Honors … Selected Publications …

… bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of … Human Intestinal Tract ( MetaHIT ); Community Cyber-infrastructure for Advanced Marine Microbial Ecology Research and …

… evolution and rapid changes in both genome content and structure following a genome duplication event that occured … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to S.C.); the Key R&D Program of Zhejiang Province (grant 2021C02009 to S.X.) and Zhejiang Provincial Natural Science …

… it was possible to identify specific attributes — such as heat resistance, fast growth rates, and an ability to … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed …

The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI logo – stacked JGI logo – horizontal JGI logo – indicia …

The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input … Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; Communicate with the …

… sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has allowed the JGI to increase sequencing output while significantly … hand with the Project Management Office to help ensure the JGI’s genomic capabilities are ready and applicable to …

… by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… years ago, cyanobacteria acquired the ability to produce their own food and generate oxygen as a byproduct. The … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … sharing co-first authorship. Their data suggests that the shared common ancestor of all five bacterial lineages was an …