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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. … processes. This allows us to provide diverse scientific communities with large amounts of standardized high-quality … Looking for BBTools? Find it here.  …
Learn more
Natural Prodcast Episode 12: Nadine Ziemert
… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … what I always expected. Because we know from soil that communities change very much, that whenever it rains, then …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes … to adapt to changing environments. It also sheds light on why the rapid injection of mutations in a particular gene … uncover these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from …
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Diversity and Distribution of Hydrocarbon-Degrading Genes in the Cold Seeps from the Mediterranean and Caspian Seas
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. As they … influencing the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user … problems.  The mission of the National Energy Research Scientific Computing Center ( NERSC ) is to … The researcher then submits a proposal for consideration in the next review cycle. All proposals undergo technical …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … lending their expertise in developing and managing public viral genomics resources such as analytical tools and data … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? … spike protein and the ACE2 receptor, so we’re looking at viral entry inhibitors. But the other important part of our …
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Natural Prodcast Episode 19: Bill Fenical
… of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer … learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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Industry Engagement Program
… Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and government institutions — with capabilities that had remained largely unknown and underutilized by industry. When … User Programs entail a competitive, proposal-based process including peer review. The process is streamlined, with …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It … by those generating data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for … Embargo : A period in which data is not publicly available in JGI systems or …
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