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… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help … to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, … and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy of …

Our data platforms are a key resource for the broader scientific … demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …

… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 …

The JGI has a strong interest in seeing that the data produced by the facility … and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … of multiple forest systems, this work sets up protocols and pipelines that other teams can use around the …

… and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy and nutrient … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …

Machine learning methods were applied on sequenced fungal … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the …

… colors. I mean, where else in nature– and they’re not fungal. Where else nature can you go see colonies of … media. So you could take International Streptomyces Protocol media number 2, ISP2, and dilute it by a factor of … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …

… that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … ecology. I studied Vibrio species in the ocean, so heterotrophic bacteria. Now, we didn’t get into secondary … where this happened have a tendency to be susceptible to a fungal infection of rye grain – a specific fungus, Claviceps …

… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of … on marine actinobacteria. Then we moved into marine proteobacteria. Not a big leap, but then we began looking at …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …