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Natural Prodcast Episode 13: Francisco Barona Goméz
… the recording. But I recently changed the audio editing suite I use which had some nice magic that clean things up. … is a curated database of actinobacteria for evolutionary studies, and hopefully we can catch him again some time to … different perspectives– from the chemists on one side, microbiologists, and evolutionary biologists more recently– we …
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Natural Prodcast Episode 20: Brian Bachmann
… where he is the PI of the Laboratory for Biosynthetic Studies. Brian and I are old friends and colleagues, having … they said, OK, now, you have to go get the molecules. So I built a program there to do that. Yeah. JACKIE WINTER: Yeah, … mammalian systems. But it allows us to assay on a single cell level against cell lines and against primary cells …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … As temperatures fluctuate, salt levels change in the ocean; this affects the growth and survival of the … several points in time to assess nutrient concentration and cell death. Immediately upon transfer, the experimental …
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Natural Prodcast Episode 18: A CSP Primer
… facilities at all the National Labs. BER also provides us guidance on what kinds of research to support and conduct. I … our eukaryotic genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating … and coastal. But we’ve kind of shied away from the ocean. Microbes. We’ve done those in the past, but the DOE …
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Mission
… expertise to support the global research community in studies of complex biological and environmental systems. We … Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, atop the … of our Community Science Program, characterize organisms (plants and microbes) relevant to the DOE science mission …
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CSP Large Scale Call
… is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging … approaches to unravel functional capabilities of plants, microbes and microbial communities, global carbon … the CSP Large Scale call, a Letter of Intent (LOI) is required by the due date printed below. Proposals will be …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … M. polymorpha has been used as a model for evolutionary studies. Its place among early-diverging plant lineages … into genes critical for roles including plant growth and cell wall development.  M. polymorpha is also among one of …
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Exploring the roles of microbes in facilitating plant adaptation to climate change
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Natural Prodcast Episode 12: Nadine Ziemert
… cousins. So we both went to Scripps [Institution of Oceanography in San Diego] together. And I worked for Brad … or the genes that you are analyzing. And then we’re building phylogenies a lot, making phylogenetic trees, and … secondary metabolite pathways as viewed through metagenome studies, and what more JGI and others can do to enable …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy …
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Microbial Program
… those associated with microeukaryotes. The program also studies giant viruses. Key research areas include … and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single cell sequencing approaches are also …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host … feedstock crops. Summary A plant is like an office building, its roots are akin to the ground floor lobby. … example” of how a 1000 Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by …
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