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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … there, they just are going to be there in different percentages of relative abundance. But again, going back to … that’s Q-U-A-V-E E-T-H-N-O-B-O-T, also on Instagram at the same handle. The book will be out on October …
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Finding the Fermenters
… from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. … also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the …
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Natural Prodcast Episode 11: Marnix Medema
… of biosynthetic gene clusters. But with all of the other IMG kind of hooks into IMG’s data. IMG being Integrated … episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is … Yeah. There’s so much to do there especially looking at metagenomes. So we’re actually eager soon to also work on …
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What Happens To a Rainforest When You Dial Up Drought?
… happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, …
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Protocols
Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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I-Min (Amy) Chen
… infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in 2006, she was … et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids … K, and Chu K. Maintaining a Microbial Genome & Metagenome Data Analysis System in an Academic Setting, SSDBM …
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JGI & KBase at PAG XXVII
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Webinars on Offerings & Capabilities
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Ken Chu
… of analytical tools and user interface components for the IMG family of systems. …
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Krishna Palaniappan
… design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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Natural Prodcast Episode 5: Brad Moore
… marine natural product biosynthesis and at the beginning stages of connecting molecules and genes. And then genomics … would spend time between our two laboratories doing metagenomics, some genomics. We were a little concerned … end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes …
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Natural Prodcast Episode 18: A CSP Primer
… a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …
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