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Natural Prodcast Episode 2: The Primer, Part 2
… that – I want to say like lipid bilayer, you know, in the cell.  DAN: It depends on lifestyle. So there are lots of … is similar to primary metabolism. So if you were, you know, sequencing an organism for the first time, and you’ve never … think of bacteria. You think of bacteria as sort of these single celled organisms, kind of all over. But these kinds …
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Sequencing Submission Requirements for DNA Synthesis
… add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … the Letter of Intent; rather proposals are submitted in a single step. … The researcher then submits a proposal for … plan is written into a Statement of Work document. … For sequencing projects, once work is under way, raw sequence …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… quantities of DNA derived from individual environmental cells. The proof of principle study built off earlier … and finished genome derived from an uncultured bacterial single cell – a symbiont of the green sharpshooter. In 2012, … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, … great conversations that we’ve already recorded with some excellent scientists, and that’s probably how we’ll continue …
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Frequently Asked Questions: Project Management
… required documentation here .  … You can request a JGI Single Sign On account at https://signon.jgi.doe.gov . This … manager may then schedule and allocate resources for DNA sequencing. … No. However, the JGI does maintain a list of … ) Metagenomes and Single Cells: IMG/M   (citation: …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … which is still hard to do. We are mining a lot of environments to see where are environments that have the most …
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Natural Prodcast Episode 14: Nigel Mouncey
… a great opportunity to learn more about JGI, hear some excellent talk from our users and from other invited guests, … NIGEL MOUNCEY: Oh, sure. I think our legacy obviously is in sequencing.  DAN: Of course.  NIGEL MOUNCEY: Sequencing the … and the stabilized isotope probing work that we’re doing, single cell work we’re doing. And using these together along …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a …
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale … an unlimited number of proposals).  For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … before– or kind of around about when the first genome sequencing was done. But natural products– marine natural … both of those things have still very much done to be excellently. Dan Udwary: For sure. Kate Duncan: Not that …
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