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Plant Microbial Interactions Group
… diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified resident …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric …
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Genome Insider
… The Genome Insider podcast brings listeners into the science … researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the … A primary purpose of this project is to bring educators from a broad range of … in microbial genomics, metagenomics, and computational biology, and to empower them with the knowledge and …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users … from the public sector: academic and government institutions — with capabilities that had remained largely unknown … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural products and the science and scientists of secondary metabolism. Hey everybody, this is Dan with episode … in partnering with us, we want to hear from you. We have projects in genome sequencing, DNA synthesis, …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   … Sequencing , Biodesign and Metabolomics .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic frameworks spanning …
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … is kind of like a CSP, but you would be proposing a larger project that requires the work of two or more DOE user …
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a research project are appropriately recognized and credited for their … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …
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