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CSP Large Scale Call
The Community Science Program Large Scale Call is focused on genomic science projects … capabilities. All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of …
Learn more
Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy … center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade … different types of data, including expression data, use of metatranscriptomics, where you measure gene expression …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform … the JGI at any time using a simple web-based form and are reviewed annually. For accepted proposals, sequencing, … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
Learn more
Project Management Office
The JGI Project Management Office carries out a number of activities to … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work … Natasha Brown Supply Chain Manager Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and … and metabolomics. Submission Deadline Check back Spring 2026 for the FY27 call Check back Spring 2026 for the FY27 call Sept. 9, 2025 Jan. 29, 2026 Review Date June 2025 August 2025 November 2025 March 2026 … …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … train students and professors in laboratory techniques and data analyses compile original data for improving fungal … of fungal genomes, along with curated metadata to enable comprehensive comparative analysis.  MycoCosm provides data …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint … Patrick would spend time between our two laboratories doing metagenomics, some genomics. We were a little concerned … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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Natural Prodcast Episode 15: Katherine Duncan
… … Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … the idea of taking all the different natural products data that there is and putting things, coalescing them, so … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
Learn more
Institutional User Agreements
Every approved proposal starts with a User Agreement — before any … of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic … then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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FICUS-NERSC/KBASE
Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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