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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 20: Brian Bachmann
… come, though, too when you start talking about going after single gene clusters. BRIAN BACHMANN: That’s right. JACKIE … mammalian systems. But it allows us to assay on a single cell level against cell lines and against primary cells … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …
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Natural Prodcast Episode 14: Nigel Mouncey
… a great opportunity to learn more about JGI, hear some excellent talk from our users and from other invited guests, … and the stabilized isotope probing work that we’re doing, single cell work we’re doing. And using these together along … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… quantities of DNA derived from individual environmental cells. The proof of principle study built off earlier … and finished genome derived from an uncultured bacterial single cell – a symbiont of the green sharpshooter. In 2012, … in carbon fixation in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … solve energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … advancement in sort of both areas. And I suspect that no single change will resolve the problem. But that stepwise … carefully at these as being candidates siderophores. Or for cell-cell signaling or for, you know, other other roles …
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Natural Prodcast Episode 18: A CSP Primer
… molecules obviously play a huge role in ecology through cell-cell communication, chemical warfare, and symbiotic … for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow cytometry for … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Metagenome Program
… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and metabolomics data, shedding light on microbial …
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DNA Synthesis Program
Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 fixation, redox reactions, and …
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Natural Prodcast Episode 1: The Primer, Part 1
Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … great conversations that we’ve already recorded with some excellent scientists, and that’s probably how we’ll continue …
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CSP Large Scale Call
All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data … the applicant/community, and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There …
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