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For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who … interested in translating genomic information to biological function Details Proposals must be preceded by …

Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … bobtail squid has two organs that solely house– whose sole function is to house bacterial associates. And so the one … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …

The Facilities Integrating Collaborations for User Science (FICUS) … Previously, researchers had to apply to each facility with separate review schedules and selection processes, … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

Research in the Eloe-Fadrosh group focuses on using genome-resolved … better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … and protein folding models, to improve the accuracy of functional predictions and speed up genome analysis. … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … the submitting researcher, and by LBNL. The Uniform Biological Material Transfer Agreement (UBMTA) and UBMTA …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … a class of natural product with a really cool chemical structure. We try to explain it, but it’s chemistry, so I … So that’s the fundamental aspects. And the second, from a biological potential application perspective, is because …

… is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial … biogeochemistry — questions of relevance to DOE’s Office of Biological and Environmental Research (BER) missions .  …

… for people, but also those molecules that mediate a well functioning ecosystem and environment and earth. So yeah, … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … a community effort of putting together the natural product structures that are known. I forget how many structures are …

… of natural products from invertebrates, mostly. Dan Udwary: Structure elucidation, yeah. Kate Duncan: Right, yeah, so … but suddenly we have platforms and we have community sharing of data. And we can start going, right, well this … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …

… of host-virus interactions, the exploration of the functional dark matter as well as the development of novel … Science  356: 82-85 Ovchinnikov S. et al. (2017) Protein structure determination using metagenome sequence data. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a long, wide ranging conversation … cluster database, and a tool for predicting natural product structures from genomes. And I was writing grants furiously …