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… it is more related to what JGI does, which is sequence genomes. And we just published last year in the Nature … us, we want to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… files. ApE is an open source desktop application written by M. Wayne Davis or commercial options include SnapGene . … …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical … The ranked proposal list, along with a recommendation from management at JGI and the other participating …

… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… is a bacterial sacred metabolite, and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … is similar to primary metabolism. So if you were, you know, sequencing an organism for the first time, and you’ve never …

… yes, sure, right. And yeah, so we worked on the Salinospora genomes. That was a really fun project. We had Brad on and … I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… genomic information using minute quantities of DNA derived from individual environmental cells. The proof of principle … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led … identify, and characterize more than 200 microbial genomes that were mapped to nearly 30 major previously …

… that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …